Java Developer - Bioinformatics

Published date Posted on Indeed on Jun 21, 2022 (8 d ago)

Proteome Software provides biomedical research scientists with tools to confidently interpret their complex data.

If you are looking for experience as part of a small team working on interesting problems and creating state-of-the-art analytic tools that may lead to medical breakthroughs, come work for us! We are looking for someone with a passion and aptitude for object-oriented programming.

We offer comprehensive employee benefits and the opportunity to travel to and participate in scientific conferences.


  • Contribute to the design, development, validation, and presentation of cutting-edge techniques in mass-spectrometry and bioinformatics
  • Improve, extend, and fix bugs in Java-based desktop applications
  • Design or modify user interfaces and data visualizations to help scientists interpret their data
  • Design, modify, and optimize complex algorithms
  • Develop automated tests and internal documentation



  • Bachelors or advanced degree (or equivalent experience) in Computer Science, Bioinformatics, or related field
  • Critical thinking skills to troubleshoot and solve complex analytical problems
  • Demonstrated interpersonal skills, including the ability to verbally communicate with a customer base composed of biomedical researchers
  • Demonstrated proficiency developing code in an object-oriented language (Java preferred)

Preference given to:

  • Working knowledge of bioinformatic concepts and statistics
  • Understanding of mass spectrometry, proteomics and/or metabolomics
  • Experience working on large software projects and/or legacy code
  • Experience with high-performance data processing, multithreading, or asynchronous programming
  • Understanding of distributed version control systems (e.g., Git, Mercurial, etc.)
  • Resident of Oregon or Washington

To learn more about us, check out

Job Type: Full-time

Pay: $80,000.00 - $110,000.00 per year


  • 401(k)
  • Dental insurance
  • Flexible spending account
  • Health insurance
  • Paid time off
  • Vision insurance


  • 8 hour shift
  • Monday to Friday

COVID-19 considerations:
Until public health conditions improve to safe levels for our Portland location, all employees are working remotely from home-based locations in daily collaboration with their operational team members.

Work Location: Remote

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