Published date Posted on Indeed on May 11, 2022 (16 d ago)

Bioinformatics Programmer

Shift - Typically between 9AM-5PM Central Time.

Job Description

  • We have an exciting contract opportunity for a Bioinformatics Programmer to support bioinformatics pipeline development in GRC.
  • Primary responsibility is the development of existing processing pipelines implemented in CWL (e.g., Bulk RNAseq, Germline/Somatic Variant) for deployment in Linux HPC environments, as well as the updating of relevant user documentation.
  • Candidate will work with stakeholder users to enable utilization of CWL pipelines on their project data.
  • If candidate harbors strong skills/interest in pipeline deployment in AWS, there is also a need to connect these pipelines to a highly-scalable internal Genomics Data Platform.
  • Ideal candidate must have strong CWL workflow development skills, preferably in a bioinformatics environment.
  • Data engineering and software development roles in Bioinformatics settings.

Skills

  • Proficient in CWL workflow development
  • Containerization technology (e.g., Docker, Singularity)
  • Programming in a Linux HPC environment with Python and BASH
  • Version control with git
  • Strong ability to communicate with group members as well as stakeholders

Years of experience, education, and/or certification

  • B.S. or M.S. in Computational Biology, Bioinformatics, Computer Science, or comparable field.

Nice to have (but not required)

  • Comfortable working with NGS data (mainly short read technology)
  • AWS (s3, EC2, Batch, SQS)
  • CI/CD practices

Job Type: Contract

Schedule:

  • 8 hour shift

Experience:

  • Linux HPC: 1 year (Preferred)
  • CWL workflow development: 1 year (Preferred)
  • NGS data: 1 year (Preferred)

Work Location: Remote


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